In Barcelona I shot some time lapses in very windy weather and I only had the gorilla pod as a tripod with me. The result makes you seasick when watching.
Here is a still from that sequence:
Luckily, there is photoshop with its great "auto align" function. This will nicely deshake the movie. To use it, proceed the following way:
First load all the images as a stack into layers (File... Scripts... Load Images into Stack)
Then use Selection... Select all layers
The auto alignment dialog is opened with Edit... Auto Align Layers
With the selection of Auto:
and clicking on "ok", the alignement procedure starts. Depending on the amount of memory you have and the number of images to align, it takes very very very long. Reducing the size of the images speeds the process up by a large factor.
When it has finished, you can save the single layers again into seperate images with File... Scripts... Export Layers as Images...
Then choose a folder and an image format.
Here is the result of the raw and the deshake barcelona movie: